MFE
primer
3.1
About 3.1
(current)
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Multiplex PCR Primer Design
BETA
Regions in BED format (<= 20,
example
) *
Beta best, typically for SNPs enrichment followed by NGS.
Database
UCSC - Homo sapien - hg19 - Genome
UCSC - Mus musculus - mm10 - Genome
Species.
SNP filtering
No
Yes
To avoid primer 3' end sitting on the SNP site.
Submit
Primer Design Parameters
Primer Min Size
Primer Opt Size
Primer Max Size
Primer Min Tm
Primer Opt Tm
Primer Max Tm
Product Min Size
Product Max Size
MFEprimer Parameters
Dimer Score Cutoff
Hairpin Score Cutoff
T
m
Min
°C
Minimum Tm value required for the binding stability between primer and its binding sites.
Nonspecific Amplicon Size (bp)
From
To
Product size: 0 (min) - 1000000 (max).
MFEprimer-3.1
Featured
New Server
New
Primer Design
Specificity analysis
Dimer analysis
Hairpin analysis
Old Versions
MFEprimer-3.0
MFEprimer-2.0
Contact
Bugs? contact Wubin Qu <quwubin@gmail.com>