Databases

UCSC - Anolis carolinensis - anoCar1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/anoCar1/bigZips/anoCar1.2bit

UCSC - Anolis carolinensis - anoCar2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/anoCar2/bigZips/anoCar2.2bit

UCSC - Anopheles gambiae v. MOZ2 - anoGam1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/anoGam1/bigZips/anoGam1.2bit

UCSC - Apis mellifera - apiMel1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/apiMel1/bigZips/apiMel1.2bit

UCSC - Apis mellifera - apiMel2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/apiMel2/bigZips/apiMel2.2bit

UCSC - Aplysia californica - aplCal1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/aplCal1/bigZips/aplCal1.2bit

UCSC - Apteryx australis - aptMan1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/aptMan1/bigZips/aptMan1.2bit

UCSC - Aquila chrysaetos canadensis - aquChr2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/aquChr2/bigZips/aquChr2.2bit

UCSC - Balaenoptera acutorostrata scammoni - balAcu1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/balAcu1/bigZips/balAcu1.2bit

UCSC - Bison bison - bisBis1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/bisBis1/bigZips/bisBis1.2bit

UCSC - Bos taurus - bosTau2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/bosTau2/bigZips/bosTau2.2bit

UCSC - Bos taurus - bosTau3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/bosTau3/bigZips/bosTau3.2bit

UCSC - Bos taurus - bosTau4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/bosTau4/bigZips/bosTau4.2bit

UCSC - Bos taurus - bosTau6 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/bosTau6/bigZips/bosTau6.2bit

UCSC - Bos taurus - bosTau7 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/bosTau7/bigZips/bosTau7.2bit

UCSC - Bos taurus - bosTau8 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/bosTau8/bigZips/bosTau8.2bit

UCSC - Branchiostoma floridae - braFlo1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/braFlo1/bigZips/braFlo1.2bit

UCSC - Caenorhabditis japonica - caeJap1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/caeJap1/bigZips/caeJap1.2bit

UCSC - Caenorhabditis brenneri (PB2801) - caePb1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/caePb1/bigZips/caePb1.2bit

UCSC - Caenorhabditis brenneri (PB2801) - caePb2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/caePb2/bigZips/caePb2.2bit

UCSC - Caenorhabditis remanei - caeRem2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/caeRem2/bigZips/caeRem2.2bit

UCSC - Caenorhabditis remanei - caeRem3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/caeRem3/bigZips/caeRem3.2bit

UCSC - Callithrix jacchus - calJac1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/calJac1/bigZips/calJac1.2bit

UCSC - Callithrix jacchus - calJac3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/calJac3/bigZips/calJac3.2bit

UCSC - Callorhinchus milii - calMil1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/calMil1/bigZips/calMil1.2bit

UCSC - Canis familiaris - canFam1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/canFam1/bigZips/canFam1.2bit

UCSC - Canis familiaris - canFam3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/canFam3/bigZips/canFam3.2bit

UCSC - Cavia porcellus - cavPor3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/cavPor3/bigZips/cavPor3.2bit

UCSC - Caenorhabditis briggsae - cb3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/cb3/bigZips/cb3.2bit

UCSC - Caenorhabditis elegans - ce10 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ce10/bigZips/ce10.2bit

UCSC - Caenorhabditis elegans - ce11 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ce11/bigZips/ce11.2bit

UCSC - Caenorhabditis elegans - ce2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ce2/bigZips/ce2.2bit

UCSC - Caenorhabditis elegans - ce4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ce4/bigZips/ce4.2bit

UCSC - Caenorhabditis elegans - ce6 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ce6/bigZips/ce6.2bit

UCSC - Ceratotherium simum - cerSim1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/cerSim1/bigZips/cerSim1.2bit

UCSC - Chlorocebus sabaeus - chlSab2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/chlSab2/bigZips/chlSab2.2bit

UCSC - Choloepus hoffmanni - choHof1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/choHof1/bigZips/choHof1.2bit

Painted turtle genomic DNA from UCSC chrPic1

ftp://hgdownload.soe.ucsc.edu/goldenPath/chrPic1/bigZips/chrPic1.2bit

UCSC - Ciona intestinalis (sea squirt) - ci1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ci1/bigZips/ci1.2bit

UCSC - Ciona intestinalis (sea squirt) - ci2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ci2/bigZips/ci2.2bit

UCSC - Ciona intestinalis (sea squirt) - ci3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ci3/bigZips/ci3.2bit

UCSC - Cricetulus griseus - criGri1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/criGri1/bigZips/criGri1.2bit

UCSC - Cricetulus griseus - criGriChoV1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV1/bigZips/criGriChoV1.2bit

UCSC - Danio rerio - danRer10 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer10/bigZips/danRer10.2bit

UCSC - Danio rerio - danRer11 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer11/bigZips/danRer11.2bit

UCSC - Danio rerio - danRer3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer3/bigZips/danRer3.2bit

UCSC - Danio rerio - danRer4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer4/bigZips/danRer4.2bit

UCSC - Danio rerio - danRer5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer5/bigZips/danRer5.2bit

UCSC - Danio rerio - danRer6 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer6/bigZips/danRer6.2bit

UCSC - Danio rerio - danRer7 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer7/bigZips/danRer7.2bit

UCSC - Dasypus novemcinctus - dasNov3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dasNov3/bigZips/dasNov3.2bit

UCSC - Dipodomys ordii - dipOrd1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dipOrd1/bigZips/dipOrd1.2bit

UCSC - Drosophila melanogaster - dm1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dm1/bigZips/dm1.2bit

UCSC - Drosophila melanogaster - dm2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dm2/bigZips/dm2.2bit

UCSC - Drosophila melanogaster - dm3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dm3/bigZips/dm3.2bit

UCSC - Drosophila melanogaster - dm6 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dm6/bigZips/dm6.2bit

UCSC - Drosophila pseudoobscura - dp2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dp2/bigZips/dp2.2bit

UCSC - Drosophila pseudoobscura - dp3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/dp3/bigZips/dp3.2bit

UCSC - Drosophila ananassae - droAna1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droAna1/bigZips/droAna1.2bit

UCSC - Drosophila ananassae - droAna2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droAna2/bigZips/droAna2.2bit

UCSC - Drosophila erecta - droEre1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droEre1/bigZips/droEre1.2bit

UCSC - Drosophila grimshawi - droGri1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droGri1/bigZips/droGri1.2bit

UCSC - Drosophila mojavensis - droMoj1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droMoj1/bigZips/droMoj1.2bit

UCSC - Drosophila mojavensis - droMoj2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droMoj2/bigZips/droMoj2.2bit

UCSC - Drosophila persimilis - droPer1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droPer1/bigZips/droPer1.2bit

UCSC - Drosophila sechellia - droSec1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droSec1/bigZips/droSec1.2bit

UCSC - Drosophila simulans - droSim1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droSim1/bigZips/droSim1.2bit

UCSC - Drosophila virilis - droVir1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droVir1/bigZips/droVir1.2bit

UCSC - Drosophila virilis - droVir2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droVir2/bigZips/droVir2.2bit

UCSC - Drosophila yakuba - droYak1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droYak1/bigZips/droYak1.2bit

UCSC - Drosophila yakuba - droYak2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/droYak2/bigZips/droYak2.2bit

UCSC - Filoviridae ebolavirus - eboVir3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/eboVir3/bigZips/eboVir3.2bit

UCSC - Echinops telfairi - echTel1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/echTel1/bigZips/echTel1.2bit

UCSC - Echinops telfairi - echTel2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/echTel2/bigZips/echTel2.2bit

UCSC - Equus caballus - equCab1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/equCab1/bigZips/equCab1.2bit

UCSC - Equus caballus - equCab2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/equCab2/bigZips/equCab2.2bit

UCSC - Erinaceus europaeus - eriEur1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/eriEur1/bigZips/eriEur1.2bit

UCSC - Erinaceus europaeus - eriEur2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/eriEur2/bigZips/eriEur2.2bit

UCSC - Felis catus - felCat3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat3/bigZips/felCat3.2bit

UCSC - Felis catus - felCat4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat4/bigZips/felCat4.2bit

UCSC - Felis catus - felCat5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat5/bigZips/felCat5.2bit

UCSC - Felis catus - felCat8 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/felCat8/bigZips/felCat8.2bit

UCSC - Takifugu rubripes v3.0 - fr1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/fr1/bigZips/fr1.2bit

UCSC - Takifugu rubripes v4.0 - fr2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/fr2/bigZips/fr2.2bit

UCSC - Takifugu rubripes v5.0 - fr3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/fr3/bigZips/fr3.2bit

UCSC - Gadus morhua - gadMor1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/gadMor1/bigZips/gadMor1.2bit

UCSC - Gallus gallus v1.0 - galGal2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/galGal2/bigZips/galGal2.2bit

UCSC - Gallus gallus v2.1 - galGal3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/galGal3/bigZips/galGal3.2bit

UCSC - Gallus gallus - galGal4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/galGal4/bigZips/galGal4.2bit

UCSC - Gallus gallus - galGal5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/galGal5/bigZips/galGal5.2bit

UCSC - Galeopterus variegatus - balAcu1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/galVar1/bigZips/galVar1.2bit

UCSC - Gasterosteus aculeatus - gasAcu1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/gasAcu1/bigZips/gasAcu1.2bit

UCSC - Geospiza fortis - geoFor1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/geoFor1/bigZips/geoFor1.2bit

UCSC - Gorilla gorilla gorilla - gorGor3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor3/bigZips/gorGor3.2bit

UCSC - Gorilla gorilla gorilla - gorGor4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor4/bigZips/gorGor4.2bit

UCSC - Gorilla gorilla gorilla - gorGor5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor5/bigZips/gorGor5.2bit

UCSC - Heterocephalus glaber - hetGla1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/hetGla1/bigZips/hetGla1.2bit

UCSC - Heterocephalus glaber - hetGla2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/hetGla2/bigZips/hetGla2.2bit

UCSC - Homo sapien - hg16 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/hg16/bigZips/hg16.2bit

UCSC - Homo sapien - hg18 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/hg18/bigZips/hg18.2bit

Human genomic DNA from UCSC hg19

ftp://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit

UCSC - Homo sapien - hg38 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.2bit

UCSC - Latimeria chalumnae - latCha1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/latCha1/bigZips/latCha1.2bit

UCSC - Loxodonta africana - loxAfr3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/loxAfr3/bigZips/loxAfr3.2bit

UCSC - Notamacropus eugenii - macEug2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/macEug2/bigZips/macEug2.2bit

UCSC - Macaca fascicularis - macFas5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/macFas5/bigZips/macFas5.2bit

UCSC - Manis pentadactyla - manPen1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/manPen1/bigZips/manPen1.2bit

UCSC - Meleagris gallopavo - melGal1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/melGal1/bigZips/melGal1.2bit

UCSC - Meleagris gallopavo - melGal5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/melGal5/bigZips/melGal5.2bit

UCSC - Melopsittacus undulatus - melUnd1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/melUnd1/bigZips/melUnd1.2bit

UCSC - Microcebus murinus - micMur1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/micMur1/bigZips/micMur1.2bit

UCSC - Microcebus murinus - micMur2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/micMur2/bigZips/micMur2.2bit

UCSC - Mus musculus - mm10 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/mm10.2bit

UCSC - Mus musculus - mm7 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/mm7/bigZips/mm7.2bit

UCSC - Mus musculus - mm8 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/mm8/bigZips/mm8.2bit

UCSC - Mus musculus - mm9 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/mm9/bigZips/mm9.2bit

UCSC - Monodelphis domestica - monDom4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/monDom4/bigZips/monDom4.2bit

UCSC - Monodelphis domestica - monDom5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/monDom5/bigZips/monDom5.2bit

UCSC - Mustela putorius furo - musFur1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/musFur1/bigZips/musFur1.2bit

UCSC - Myotis lucifugus - myoLuc2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/myoLuc2/bigZips/myoLuc2.2bit

UCSC - Nanorana parkeri - nanPar1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/nanPar1/bigZips/nanPar1.2bit

UCSC - Nasalis larvatus - nasLar1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/nasLar1/bigZips/nasLar1.2bit

UCSC - Nomascus leucogenys - nomLeu1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/nomLeu1/bigZips/nomLeu1.2bit

UCSC - Nomascus leucogenys - nomLeu2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/nomLeu2/bigZips/nomLeu2.2bit

UCSC - Nomascus leucogenys - nomLeu3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/nomLeu3/bigZips/nomLeu3.2bit

UCSC - Ochotona princeps - ochPri2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ochPri2/bigZips/ochPri2.2bit

UCSC - Ochotona princeps - ochPri3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ochPri3/bigZips/ochPri3.2bit

UCSC - Oreochromis niloticus - oreNil2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/oreNil2/bigZips/oreNil2.2bit

UCSC - Ornithorhynchus anatinus - ornAna1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ornAna1/bigZips/ornAna1.2bit

UCSC - Ornithorhynchus anatinus - ornAna2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ornAna2/bigZips/ornAna2.2bit

UCSC - Oryctolagus cuniculus - oryCun2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/oryCun2/bigZips/oryCun2.2bit

UCSC - Oryzias latipes - oryLat2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/oryLat2/bigZips/oryLat2.2bit

UCSC - Otolemur garnettii - otoGar3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/otoGar3/bigZips/otoGar3.2bit

UCSC - Ovis aries - oviAri1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/oviAri1/bigZips/oviAri1.2bit

UCSC - Ovis aries - oviAri3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/oviAri3/bigZips/oviAri3.2bit

UCSC - Pan paniscus - panPan1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/panPan1/bigZips/panPan1.2bit

UCSC - Pan paniscus - panPan2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/panPan2/bigZips/panPan2.2bit

UCSC - Pan troglodytes - panTro1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/panTro1/bigZips/panTro1.2bit

UCSC - Pan troglodytes - panTro2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/panTro2/bigZips/panTro2.2bit

UCSC - Pan troglodytes - panTro3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/panTro3/bigZips/panTro3.2bit

UCSC - Pan troglodytes - panTro4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/panTro4/bigZips/panTro4.2bit

UCSC - Pan troglodytes - panTro5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/panTro5/bigZips/panTro5.2bit

UCSC - Papio anubis - papAnu2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/papAnu2/bigZips/papAnu2.2bit

UCSC - Papio hamadryas - papHam1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/papHam1/bigZips/papHam1.2bit

UCSC - Petromyzon marinus - petMar1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/petMar1/bigZips/petMar1.2bit

UCSC - Petromyzon marinus - petMar2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/petMar2/bigZips/petMar2.2bit

UCSC - Pongo abelii - ponAbe2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/ponAbe2/bigZips/ponAbe2.2bit

UCSC - Pristionchus pacificus (5.0) - priPac1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/priPac1/bigZips/priPac1.2bit

UCSC - Procavia capensis - proCap1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/proCap1/bigZips/proCap1.2bit

UCSC - Pteropus vampyrus - pteVam1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/pteVam1/bigZips/pteVam1.2bit

UCSC - Rhesus macaque - rheMac2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/rheMac2/bigZips/rheMac2.2bit

UCSC - Rhesus macaque - rheMac3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/rheMac3/bigZips/rheMac3.2bit

UCSC - Rhesus macaque - rheMac8 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/rheMac8/bigZips/rheMac8.2bit

UCSC - Rhinopithecus roxellana - rhiRox1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/rhiRox1/bigZips/rhiRox1.2bit

UCSC - Rattus norvegicus - rn4 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/rn4/bigZips/rn4.2bit

UCSC - Rattus norvegicus - rn5 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/rn5/bigZips/rn5.2bit

UCSC - Rattus norvegicus - rn6 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/rn6/bigZips/rn6.2bit

UCSC - Saccharomyces cerevisiae - sacCer1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/sacCer1/bigZips/sacCer1.2bit

UCSC - Saccharomyces cerevisiae - sacCer2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/sacCer2/bigZips/sacCer2.2bit

UCSC - Saccharomyces cerevisiae - sacCer3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/sacCer3/bigZips/sacCer3.2bit

UCSC - Saimiri boliviensis - saiBol1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/saiBol1/bigZips/saiBol1.2bit

UCSC - Sarcophilus harrisii - sarHar1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/sarHar1/bigZips/sarHar1.2bit

UCSC - Sorex araneus - sorAra1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/sorAra1/bigZips/sorAra1.2bit

UCSC - Sorex araneus - sorAra2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/sorAra2/bigZips/sorAra2.2bit

UCSC - Spermophilus tridecemlineatus - speTri2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/speTri2/bigZips/speTri2.2bit

UCSC - Strongylocentrotus purpuratus - strPur1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/strPur1/bigZips/strPur1.2bit

UCSC - Strongylocentrotus purpuratus - strPur2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/strPur2/bigZips/strPur2.2bit

UCSC - Sus scrofa - susScr11 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/susScr11/bigZips/susScr11.2bit

UCSC - Sus scrofa - susScr2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/susScr2/bigZips/susScr2.2bit

UCSC - Sus scrofa - susScr3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/susScr3/bigZips/susScr3.2bit

UCSC - Taeniopygia guttata - taeGut1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/taeGut1/bigZips/taeGut1.2bit

UCSC - Taeniopygia guttata - taeGut2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/taeGut2/bigZips/taeGut2.2bit

UCSC - Tarsius syrichta - tarSyr1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/tarSyr1/bigZips/tarSyr1.2bit

UCSC - Tarsius syrichta - tarSyr2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/tarSyr2/bigZips/tarSyr2.2bit

UCSC - Tetraodon nigroviridis - tetNig1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/tetNig1/bigZips/tetNig1.2bit

UCSC - Tetraodon nigroviridis - tetNig2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/tetNig2/bigZips/tetNig2.2bit

UCSC - Trichechus manatus latirostris - triMan1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/triMan1/bigZips/triMan1.2bit

UCSC - Tupaia belangeri - tupBel1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/tupBel1/bigZips/tupBel1.2bit

UCSC - Tursiops truncatus - turTru2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/turTru2/bigZips/turTru2.2bit

UCSC - Vicugna pacos - vicPac1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/vicPac1/bigZips/vicPac1.2bit

UCSC - Vicugna pacos - vicPac2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/vicPac2/bigZips/vicPac2.2bit

UCSC - Xenopus laevis - xenLae2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/xenLae2/bigZips/xenLae2.2bit

UCSC - Xenopus tropicalis - xenTro1 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/xenTro1/bigZips/xenTro1.2bit

UCSC - Xenopus tropicalis - xenTro2 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/xenTro2/bigZips/xenTro2.2bit

UCSC - Xenopus tropicalis - xenTro3 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/xenTro3/bigZips/xenTro3.2bit

UCSC - Xenopus tropicalis - xenTro7 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/xenTro7/bigZips/xenTro7.2bit

UCSC - Xenopus tropicalis - xenTro9 - Genome

ftp://hgdownload.soe.ucsc.edu/goldenPath/xenTro9/bigZips/xenTro9.2bit

Virus genome (EBI)

http://www.ebi.ac.uk/genomes/virus.html

Fragaria vesca v2.0.a1 pseudomolecules

-

HBV

https://www.ncbi.nlm.nih.gov/nuccore ("Hepatitis B virus"[Organism] OR HBV[All Fields]) AND "Hepatitis B virus"[porgn]

HOMD 16S rRNA RefSeq V13.2

-

HPV (human papillomavirus reference genomes)

https://pave.niaid.nih.gov/#explore/reference_genomes/human_genomes (2017.3.6)

Human GRCh37 RNA

fasp://anonftp@ftp.ncbi.nlm.nih.gov:22/genomes/H_sapiens/GRCh37.p13_interim_annotation/interim_GRCh37.p13_rna.fa.gz

Human GRCh38 RNA

fasp://anonftp@ftp.ncbi.nlm.nih.gov:22/genomes/H_sapiens/GRCh38.p10_interim_annotation/interim_GRCh38.p10_rna.fa.gz

Mouse GRCm38 RNA

fasp://anonftp@ftp.ncbi.nlm.nih.gov:22/genomes/M_musculus/RNA/rna.fa.gz

Mycobacterium tuberculosis H37Rv complete genome

https://www.ncbi.nlm.nih.gov/nuccore/NC_000962.3

Pantodon buchholzi mitochondrial DNA (complete genome)

-

Potato Genome Sequence (DM_v4.04_pseudomolecules)

https://www.ncbi.nlm.nih.gov/nuccore/15430523?report=fasta, AB043068.1

Prunus persica v2.0.a1 scaffolds

-

Pseudomonas Genomic DNA (pgd_r_16_2)

http://www.pseudomonas.com/strain/download

Phaseolus vulgaris v2.1 genome

http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Pvulgaris

Phaseolus vulgaris v2.1 transcript

http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Pvulgaris

Rice Genome release 7

http://rice.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_7.0/

UNITE Includes singletons set as RefS (version 7.1)

https://unite.ut.ee/sh_files/sh_general_release_20.11.2016.zip

UNITE Includes global and 97% singletons (version 7.1)

https://unite.ut.ee/sh_files/sh_general_release_s_20.11.2016.zip

SILVA-NR99 type strains

https://www.arb-silva.de/

Staphylococcus aureus subsp. aureus USA300_FPR3757 ( complete genome)

https://www.ncbi.nlm.nih.gov/nuccore/NC_007793.1?report=fasta

Arabidopsis thaliana Genome (TAIR10)

https://www.araport.org/downloads/TAIR10_genome_release

UNITE public 22.08.2016

-

Zea mays (AGPv4)

http://www.maizegdb.org/; http://ensembl.gramene.org/Zea_mays/Info/Index

Drosophila melanogaster genome (fruit fly assembly Release 6 plus ISO1 MT)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.gz

Drosophila melanogaster RNA (fruit fly assembly Release 6 plus ISO1 MT)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/GCF_000001215.4_Release_6_plus_ISO1_MT_rna.fna.gz

Rattus norvegicus RNA (Norway rat assembly Rnor_6.0)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/895/GCF_000001895.5_Rnor_6.0/GCF_000001895.5_Rnor_6.0_rna.fna.gz

Danio rerio genome+RNA (zebrafish assembly GRCz11)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_genomic.fna.gz

Danio rerio genome (zebrafish assembly GRCz11)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_genomic.fna.gz

Danio rerio RNA (zebrafish assembly GRCz11)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_rna.fna.gz

Apis mellifera genome+RNA (honey bee assembly Amel_4.5)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/195/GCF_000002195.4_Amel_4.5/GCF_000002195.4_Amel_4.5_genomic.fna.gz

Apis mellifera genome (honey bee assembly Amel_4.5)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/195/GCF_000002195.4_Amel_4.5/GCF_000002195.4_Amel_4.5_genomic.fna.gz

Apis mellifera RNA (honey bee assembly Amel_4.5)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/195/GCF_000002195.4_Amel_4.5/GCF_000002195.4_Amel_4.5_rna.fna.gz

Caenorhabditis elegans (assembly WBcel235) RNA

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/985/GCF_000002985.6_WBcel235/GCF_000002985.6_WBcel235_rna.fna.gz

Sus scrofa (pig) representative genome Sscrofa11.1

https://www.ncbi.nlm.nih.gov/genome/?term=pig

Sus scrofa (pig) RNA Sscrofa11.1

https://www.ncbi.nlm.nih.gov/genome/?term=pig

Escherichia coli str. K-12 substr. MG1655 (reference genome)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz

Saccharomyces cerevisiae S288C (assembly R64) (reference genome)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/045/GCF_000146045.2_R64/GCF_000146045.2_R64_genomic.fna.gz

Salmonella enterica subsp. enterica serovar Typhi str. CT18 (genome)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/195/995/GCF_000195995.1_ASM19599v1/GCF_000195995.1_ASM19599v1_genomic.fna.gz

Klebsiella pneumoniae subsp. pneumoniae HS11286 genome

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/240/185/GCF_000240185.1_ASM24018v2/GCF_000240185.1_ASM24018v2_genomic.fna.gz

Riemerella anatipestifer representative genome

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/252/855/GCF_000252855.1_ASM25285v1/GCF_000252855.1_ASM25285v1_genomic.fna.gz

Crassostrea virginica genome (assembly C_virginica-3.0)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/022/765/GCF_002022765.2_C_virginica-3.0/GCF_002022765.2_C_virginica-3.0_genomic.fna.gz

Crassostrea virginica RNA (assembly C_virginica-3.0)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/022/765/GCF_002022765.2_C_virginica-3.0/GCF_002022765.2_C_virginica-3.0_rna.fna.gz

C.chinense(assembly Chinense.v1.2.Total)

http://peppergenome.snu.ac.kr/download.php

Capsicum_annuum(assembly Capsicum_annuum_UCD10X_v.1.0)

https://solgenomics.net/organism/Capsicum_annuum/genome

Capsicum_annuum(assembly Annuum.v1.6.Total)

http://peppergenome.snu.ac.kr/download.php

C. baccatum(assembly Baccatum.v1.2.Total)

http://peppergenome.snu.ac.kr/download.php

Bubalus bubalis (water buffalo)-All 4 genomes for species

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/121/395/GCF_003121395.1_UOA_WB_1/GCF_003121395.1_UOA_WB_1_genomic.fna.gz

Fragaria_x_ananassa_Genome_v1.0_FAN_r1.1_scaffolds.fasta

ftp://ftp.bioinfo.wsu.edu/species/Fragaria_x_ananassa/Fragaria_x_ananassa_Genome_v1.0_FAN_r1.1/assembly/Fragaria_x_ananassa_Genome_v1.0_FAN_r1.1_scaffolds.fasta.gz

Sorghum bicolor (assembly Sorghum_bicolor_NCBIv3)

ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/Sorghum_bicolor/latest_assembly_versions/GCF_000003195.3_Sorghum_bicolor_NCBIv3/GCF_000003195.3_Sorghum_bicolor_NCBIv3_genomic.fna.gz

Bovine coronavirus(viruses)

https://www.ncbi.nlm.nih.gov/nuccore/?term=txid11128[Organism:exp]

Myxococcus xanthus DK 1622, complete genome

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/012/685/GCF_000012685.1_ASM1268v1/GCF_000012685.1_ASM1268v1_genomic.fna.gz

Haloferax volcanii(Representative genome Haloferax volcanii DS2)

https://www.ncbi.nlm.nih.gov/genome?LinkName=pubmed_genome&from_uid=20333302

Chlamydia trachomatis(Reference genome Chlamydia trachomatis 434/Bu)

https://www.ncbi.nlm.nih.gov/genome/471

Neisseria gonorrhoeae(Reference genome Neisseria gonorrhoeae FA 1090)

https://www.ncbi.nlm.nih.gov/genome/864?genome_assembly_id=300414

Corynebacterium kutscheri

https://www.ncbi.nlm.nih.gov/nuccore/NZ_CP011312.1?report=fasta

Streptococcus pneumoniae(Reference genome: Streptococcus pneumoniae R6)

https://www.ncbi.nlm.nih.gov/nuccore/AP018391.1?report=fasta

Mycoplasma pulmonis(Representative genome Mycoplasma pulmonis UAB CTIP)

https://www.ncbi.nlm.nih.gov/nuccore/AL445564.1?report=fasta

Bos_taurus_UMD_3.1.1 assembly for Bos taurus

https://www.ebi.ac.uk/ena/data/view/GCA_000003055.5

Salmonella enterica subsp. enterica serovar Typhimurium str. LT2(genome)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/945/GCF_000006945.2_ASM694v2

Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 (genome)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/505/GCF_000009505.1_ASM950v1

Moraxella catarrhalis(All 106 genomes for species)

https://www.ncbi.nlm.nih.gov/genome/?term=Moraxella+catarrhalis

Spirodela polyrhiza (assembly ASM198140v1)

https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Spolyrhiza

Bacillus cereus(Reference genome Bacillus cereus ATCC 14579)

https://www.ncbi.nlm.nih.gov/genome/?term=Bacillus%20cereus[Organism]&cmd=DetailsSearch

Pelodiscus sinensis (assembly PelSin_1.0)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/230/535/GCF_000230535.1_PelSin_1.0/GCF_000230535.1_PelSin_1.0_genomic.fna.gz

Physcomitrella patens (assembly Phypa V3)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/425/GCF_000002425.4_Phypa_V3/GCF_000002425.4_Phypa_V3_genomic.fna.gz

Trichomonas vaginalis G3 (assembly ASM282v1)

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/825/GCF_000002825.2_ASM282v1/GCF_000002825.2_ASM282v1_genomic.fna.gz